gunshotmatch-pipeline

GunShotMatch Analysis Pipeline

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Installation

from PyPIfrom GitHub

python3 -m pip install gunshotmatch-pipeline --user

Contents

API Reference

• gunshotmatch_pipeline
  • prepare_datafile
  • project_from_repeats
• gunshotmatch_pipeline.config
  • Configuration
• gunshotmatch_pipeline.decision_tree
  • DecisionTreeVisualiser
  • data_from_projects
  • data_from_unknown
  • dotsafe_name
  • fit_decision_tree
  • get_feature_names
  • predict_unknown
  • simulate_data
  • visualise_decision_tree
  • gunshotmatch_pipeline.decision_tree.export
    • serialise_decision_tree
    • deserialise_decision_tree
    • verify_saved_decision_tree
    • serialise_random_forest
    • deserialise_random_forest
    • verify_saved_random_forest
  • gunshotmatch_pipeline.decision_tree.predictions
    • PredictionResult
    • dump_predictions
    • load_predictions
• gunshotmatch_pipeline.excluded_peaks
  • ExcludedPeaks
  • PeakCounts
  • get_excluded_peaks
• gunshotmatch_pipeline.exporters
  • verify_saved_datafile
  • verify_saved_project
  • write_combined_csv
  • write_matches_json
• gunshotmatch_pipeline.nist_ms_search
  • LazyEngine
  • PyMSNISTSearchCfg
  • engine_on_demand
  • get_reference_data_for_cas
  • nist_ms_search_engine
• gunshotmatch_pipeline.peaks
  • align_and_filter_peaks
  • prepare_peak_list
• gunshotmatch_pipeline.projects
  • GlobalSettings
  • LoaderMixin
  • ProjectSettings
  • Projects
  • process_projects
• gunshotmatch_pipeline.results
  • Matches
  • MatchesCompounds
  • MatchesMetadata
  • compounds
  • compounds_from_matches
  • machine_learning_data
  • matches
  • unknown
  • unknown_machine_learning_data
• gunshotmatch_pipeline.unknowns
  • UnknownSettings
  • filter_and_identify_peaks
  • process_unknown
• gunshotmatch_pipeline.utils
  • project_plural
  • unknown_plural
  • friendly_name_mapping
  • NameMapping

Contributing

• Contributing
  • Coding style
  • Automated tests
  • Type Annotations
  • Build documentation locally
• Downloading source code
  • Building from source
• License

View the Function Index or browse the Source Code.

Browse the GitHub Repository